J3_4V88_036

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V88|1|A6|U|1168
4V88|1|A6|G|1169
4V88|1|A6|G|1170
4V88|1|A6|A|1171
*
4V88|1|A6|U|1468
4V88|1|A6|A|1469
4V88|1|A6|C|1470
*
4V88|1|A6|G|1574
4V88|1|A6|G|1575
4V88|1|A6|A|1576
4V88|1|A6|A|1577

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CF

40S ribosomal protein S5

Chain CQ

40S ribosomal protein S16-A

Chain CS

40S ribosomal protein S18-A

Chain CT

40S ribosomal protein S19-A