J3_4V88_039
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 4V88|1|A6|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A6|U|1283
4V88|1|A6|C|1284
4V88|1|A6|U|1285
4V88|1|A6|U|1286
4V88|1|A6|A|1287
4V88|1|A6|G|1288
*
4V88|1|A6|C|1327
4V88|1|A6|G|1328
4V88|1|A6|A|1329
4V88|1|A6|G|1330
4V88|1|A6|A|1331
4V88|1|A6|C|1332
*
4V88|1|A6|G|1419
4V88|1|A6|C|1420
4V88|1|A6|A|1421
4V88|1|A6|A|1422
4V88|1|A6|U|1423
4V88|1|A6|A|1424
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain CD
- 40S ribosomal protein S3
- Chain CQ
- 40S ribosomal protein S16-A
- Chain CR
- 40S ribosomal protein S17-A
- Chain CU
- 40S ribosomal protein S20
- Chain Cd
- 40S ribosomal protein S29-A
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