J3_4V88_046
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 4V88|1|A1|A|398, 4V88|1|A1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_046 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0468
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V88|1|A1|A|369
4V88|1|A1|U|370
4V88|1|A1|G|371
4V88|1|A1|A|372
4V88|1|A1|A|373
4V88|1|A1|A|374
4V88|1|A1|A|375
4V88|1|A1|G|376
4V88|1|A1|A|377
4V88|1|A1|A|378
4V88|1|A1|C|379
*
4V88|1|A1|G|390
4V88|1|A1|A|391
4V88|1|A1|G|392
4V88|1|A1|U|393
4V88|1|A1|G|394
4V88|1|A1|A|395
4V88|1|A1|A|396
4V88|1|A1|A|397
4V88|1|A1|A|398
4V88|1|A1|A|399
4V88|1|A1|G|400
4V88|1|A1|U|401
4V88|1|A1|A|402
4V88|1|A1|C|403
4V88|1|A1|G|404
*
4V88|1|A4|C|19
4V88|1|A4|U|20
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4-A
- Chain BP
- 60S ribosomal protein L17-A
- Chain BY
- 60S ribosomal protein L26-A
- Chain Bl
- 60S ribosomal protein L39
Coloring options: