J3_4V88_050
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCCUGA*UGCAGGCCACCAU
- Length
- 35 nucleotides
- Bulged bases
- 4V88|1|A1|C|1556, 4V88|1|A1|A|1558, 4V88|1|A1|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V88|1|A1|A|1537
4V88|1|A1|G|1538
4V88|1|A1|A|1539
4V88|1|A1|U|1540
4V88|1|A1|G|1541
4V88|1|A1|G|1542
*
4V88|1|A1|C|1551
4V88|1|A1|G|1552
4V88|1|A1|U|1553
4V88|1|A1|U|1554
4V88|1|A1|U|1555
4V88|1|A1|C|1556
4V88|1|A1|A|1557
4V88|1|A1|A|1558
4V88|1|A1|A|1559
4V88|1|A1|G|1560
4V88|1|A1|G|1561
4V88|1|A1|C|1562
4V88|1|A1|C|1563
4V88|1|A1|U|1564
4V88|1|A1|G|1565
4V88|1|A1|A|1566
*
4V88|1|A1|U|1572
4V88|1|A1|G|1573
4V88|1|A1|C|1574
4V88|1|A1|A|1575
4V88|1|A1|G|1576
4V88|1|A1|G|1577
4V88|1|A1|C|1578
4V88|1|A1|C|1579
4V88|1|A1|A|1580
4V88|1|A1|C|1581
4V88|1|A1|C|1582
4V88|1|A1|A|1583
4V88|1|A1|U|1584
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S ribosomal protein L2-A
- Chain BG
- 60S ribosomal protein L8-A
- Chain BN
- 60S ribosomal protein L15-A
- Chain BX
- 60S ribosomal protein L25
- Chain Bj
- 60S ribosomal protein L37-A
Coloring options: