J3_4V89_005

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V89|1|AA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V89_005 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1561

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V89|1|AA|C|990
4V89|1|AA|U|991
4V89|1|AA|U|992
4V89|1|AA|G|993
4V89|1|AA|A|994
4V89|1|AA|C|995
4V89|1|AA|A|996
4V89|1|AA|U|997
*
4V89|1|AA|A|1044
4V89|1|AA|C|1045
4V89|1|AA|A|1046
4V89|1|AA|G|1047
*
4V89|1|AA|C|1210
4V89|1|AA|U|1211
4V89|1|AA|U|1212
4V89|1|AA|A|1213
4V89|1|AA|C|1214
4V89|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14