J3_4V89_034

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

4V89|1|BA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V89_034 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0892

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V89|1|BA|A|56
4V89|1|BA|C|57
*
4V89|1|BA|G|70
4V89|1|BA|A|71
4V89|1|BA|U|72
4V89|1|BA|A|73
4V89|1|BA|A|74
4V89|1|BA|G|75
4V89|1|BA|C|76
*
4V89|1|BA|G|110
4V89|1|BA|A|111
4V89|1|BA|U|112
4V89|1|BA|U|113
4V89|1|BA|U|114

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L29

Chain B6

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23