J3_4V89_035

3D structure

PDB id

4V89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4V89|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V89_035 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.056

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V89|1|BA|G|297
4V89|1|BA|G|298
4V89|1|BA|A|299
4V89|1|BA|A|300
4V89|1|BA|G|301
*
4V89|1|BA|C|316
4V89|1|BA|G|317
4V89|1|BA|C|318
4V89|1|BA|G|319
4V89|1|BA|A|320
4V89|1|BA|U|321
4V89|1|BA|A|322
4V89|1|BA|C|323
4V89|1|BA|A|324
4V89|1|BA|G|325
*
4V89|1|BA|C|337
4V89|1|BA|G|338
4V89|1|BA|U|339
4V89|1|BA|A|340
4V89|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24