J3_4V8A_004

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V8A|1|AA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_004 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0591

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8A|1|AA|C|1306
4V8A|1|AA|A|1307
4V8A|1|AA|A|1308
4V8A|1|AA|G|1309
*
4V8A|1|AA|C|1605
4V8A|1|AA|G|1606
4V8A|1|AA|C|1607
4V8A|1|AA|A|1608
4V8A|1|AA|A|1609
4V8A|1|AA|A|1610
4V8A|1|AA|C|1611
*
4V8A|1|AA|G|1620
4V8A|1|AA|U|1621
4V8A|1|AA|G|1622

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34