J3_4V8A_027
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V8A|1|DA|A|975, 4V8A|1|DA|G|976, 4V8A|1|DA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8A_027 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0897
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8A|1|DA|U|955
4V8A|1|DA|U|956
4V8A|1|DA|U|957
4V8A|1|DA|A|958
4V8A|1|DA|A|959
4V8A|1|DA|U|960
4V8A|1|DA|U|961
4V8A|1|DA|C|962
*
4V8A|1|DA|G|973
4V8A|1|DA|A|974
4V8A|1|DA|A|975
4V8A|1|DA|G|976
4V8A|1|DA|A|977
4V8A|1|DA|A|978
4V8A|1|DA|C|979
4V8A|1|DA|C|980
4V8A|1|DA|U|981
4V8A|1|DA|U|982
4V8A|1|DA|A|983
4V8A|1|DA|C|984
*
4V8A|1|DA|G|1221
4V8A|1|DA|G|1222
4V8A|1|DA|C|1223
4V8A|1|DA|G|1224
4V8A|1|DA|A|1225
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DJ
- 30S ribosomal protein S10
- Chain DM
- 30S ribosomal protein S13
- Chain DN
- 30S ribosomal protein S14
- Chain DS
- 30S ribosomal protein S19
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