J3_4V8A_028

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_028 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.2967

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8A|1|DA|C|990
4V8A|1|DA|U|991
4V8A|1|DA|U|992
4V8A|1|DA|G|993
*
4V8A|1|DA|C|1045
4V8A|1|DA|A|1046
4V8A|1|DA|G|1047
*
4V8A|1|DA|C|1210
4V8A|1|DA|U|1211
4V8A|1|DA|U|1212
4V8A|1|DA|A|1213
4V8A|1|DA|C|1214
4V8A|1|DA|G|1215

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DN

30S ribosomal protein S14