J3_4V8A_057

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

4V8A|1|CA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|CA|U|672
4V8A|1|CA|G|673
4V8A|1|CA|G|674
4V8A|1|CA|A|675
4V8A|1|CA|A|676
4V8A|1|CA|U|677
*
4V8A|1|CA|G|713
4V8A|1|CA|G|714
4V8A|1|CA|A|715
4V8A|1|CA|A|716
4V8A|1|CA|C|717
4V8A|1|CA|G|718
4V8A|1|CA|C|719
4V8A|1|CA|C|720
4V8A|1|CA|G|721
4V8A|1|CA|A|722
4V8A|1|CA|U|723
4V8A|1|CA|G|724
4V8A|1|CA|G|725
*
4V8A|1|CA|C|732
4V8A|1|CA|A|733
4V8A|1|CA|G|734

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain CF

30S ribosomal protein S6

Chain CK

30S ribosomal protein S11

Chain CO

30S ribosomal protein S15

Chain CR

30S ribosomal protein S18