J3_4V8A_061
3D structure
- PDB id
- 4V8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 4V8A|1|DA|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8A_061 not in the Motif Atlas
- Geometric match to J3_4LFB_011
- Geometric discrepancy: 0.0841
- The information below is about J3_4LFB_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V8A|1|DA|C|586
4V8A|1|DA|G|587
4V8A|1|DA|G|588
*
4V8A|1|DA|C|651
4V8A|1|DA|U|652
4V8A|1|DA|A|653
4V8A|1|DA|G|654
*
4V8A|1|DA|C|754
4V8A|1|DA|G|755
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DH
- 30S ribosomal protein S8
- Chain DL
- 30S ribosomal protein S12
- Chain DO
- 30S ribosomal protein S15
- Chain DQ
- 30S ribosomal protein S17
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