J3_4V8C_065

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGC*GUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

4V8C|1|CA|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|CA|U|1073
4V8C|1|CA|G|1074
4V8C|1|CA|C|1075
*
4V8C|1|CA|G|1082
4V8C|1|CA|U|1083
4V8C|1|CA|G|1084
4V8C|1|CA|U|1085
4V8C|1|CA|U|1086
4V8C|1|CA|G|1087
*
4V8C|1|CA|C|1098
4V8C|1|CA|G|1099
4V8C|1|CA|C|1100
4V8C|1|CA|A|1101
4V8C|1|CA|A|1102

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S RIBOSOMAL PROTEIN S2

Chain CH

30S RIBOSOMAL PROTEIN S5