J3_4V8D_009

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V8D|1|BA|G|686, 4V8D|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_009 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0856

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4V8D|1|BA|C|683
4V8D|1|BA|G|684
4V8D|1|BA|A|685
4V8D|1|BA|G|686
4V8D|1|BA|C|687
4V8D|1|BA|U|688
4V8D|1|BA|A|689
*
4V8D|1|BA|U|773
4V8D|1|BA|A|774
4V8D|1|BA|G|775
*
4V8D|1|BA|C|791
4V8D|1|BA|G|792
4V8D|1|BA|A|793
4V8D|1|BA|G|794

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2