J3_4V8D_021

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUAC*GGCGAC

Length

27 nucleotides

Bulged bases

4V8D|1|CA|A|975, 4V8D|1|CA|G|976, 4V8D|1|CA|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|CA|G|954
4V8D|1|CA|U|955
4V8D|1|CA|U|956
4V8D|1|CA|U|957
4V8D|1|CA|A|958
4V8D|1|CA|A|959
4V8D|1|CA|U|960
4V8D|1|CA|U|961
4V8D|1|CA|C|962
*
4V8D|1|CA|G|973
4V8D|1|CA|A|974
4V8D|1|CA|A|975
4V8D|1|CA|G|976
4V8D|1|CA|A|977
4V8D|1|CA|A|978
4V8D|1|CA|C|979
4V8D|1|CA|C|980
4V8D|1|CA|U|981
4V8D|1|CA|U|982
4V8D|1|CA|A|983
4V8D|1|CA|C|984
*
4V8D|1|CA|G|1221
4V8D|1|CA|G|1222
4V8D|1|CA|C|1223
4V8D|1|CA|G|1224
4V8D|1|CA|A|1225
4V8D|1|CA|C|1226

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CB

TRNA-TYR

Chain CM

30S RIBOSOMAL PROTEIN S10

Chain CP

30S RIBOSOMAL PROTEIN S13

Chain CQ

30S RIBOSOMAL PROTEIN S14

Chain CV

30S RIBOSOMAL PROTEIN S19