J3_4V8D_036

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_036 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0777

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V8D|1|AA|G|46
4V8D|1|AA|C|47
*
4V8D|1|AA|G|361
4V8D|1|AA|G|362
4V8D|1|AA|A|363
4V8D|1|AA|A|364
4V8D|1|AA|U|365
4V8D|1|AA|C|366
4V8D|1|AA|U|367
*
4V8D|1|AA|A|393
4V8D|1|AA|G|394
4V8D|1|AA|C|395

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S RIBOSOMAL PROTEIN S12

Chain AS

30S RIBOSOMAL PROTEIN S16

Chain DK

50S ribosomal protein L9