J3_4V8F_003

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGAU*AUUUAAAG*CACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|A|1054
4V8F|1|AA|G|1055
4V8F|1|AA|G|1056
4V8F|1|AA|A|1057
4V8F|1|AA|U|1058
*
4V8F|1|AA|A|1080
4V8F|1|AA|U|1081
4V8F|1|AA|U|1082
4V8F|1|AA|U|1083
4V8F|1|AA|A|1084
4V8F|1|AA|A|1085
4V8F|1|AA|A|1086
4V8F|1|AA|G|1087
*
4V8F|1|AA|C|1102
4V8F|1|AA|A|1103
4V8F|1|AA|C|1104
4V8F|1|AA|U|1105

Current chains

Chain AA

RNA (2912-MER)

Nearby chains