J3_4V8F_010

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGC*GGAAUCU*AGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BA|U|45
4V8F|1|BA|G|46
4V8F|1|BA|C|47
*
4V8F|1|BA|G|361
4V8F|1|BA|G|362
4V8F|1|BA|A|363
4V8F|1|BA|A|364
4V8F|1|BA|U|365
4V8F|1|BA|C|366
4V8F|1|BA|U|367
*
4V8F|1|BA|A|393
4V8F|1|BA|G|394
4V8F|1|BA|C|395
4V8F|1|BA|G|396

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain DK

50S ribosomal protein L9