J3_4V8F_029

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_029 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0699

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8F|1|DA|C|698
4V8F|1|DA|A|699
4V8F|1|DA|G|700
*
4V8F|1|DA|C|732
4V8F|1|DA|G|733
4V8F|1|DA|A|734
4V8F|1|DA|A|735
4V8F|1|DA|C|736
*
4V8F|1|DA|G|760
4V8F|1|DA|A|761
4V8F|1|DA|U|762
4V8F|1|DA|G|763

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DD

50S ribosomal protein L2