3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8F_029 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0699
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

4V8F|1|DA|C|698
4V8F|1|DA|A|699
4V8F|1|DA|G|700
*
4V8F|1|DA|C|732
4V8F|1|DA|G|733
4V8F|1|DA|A|734
4V8F|1|DA|A|735
4V8F|1|DA|C|736
*
4V8F|1|DA|G|760
4V8F|1|DA|A|761
4V8F|1|DA|U|762
4V8F|1|DA|G|763

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DD
50S ribosomal protein L2

Coloring options:


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