J3_4V8F_049

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG*CUAGAC*GUGACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BA|C|586
4V8F|1|BA|G|587
4V8F|1|BA|G|588
*
4V8F|1|BA|C|651
4V8F|1|BA|U|652
4V8F|1|BA|A|653
4V8F|1|BA|G|654
4V8F|1|BA|A|655
4V8F|1|BA|C|656
*
4V8F|1|BA|G|750
4V8F|1|BA|U|751
4V8F|1|BA|G|752
4V8F|1|BA|A|753
4V8F|1|BA|C|754
4V8F|1|BA|G|755

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S RIBOSOMAL PROTEIN S8

Chain BO

30S RIBOSOMAL PROTEIN S12

Chain BR

30S RIBOSOMAL PROTEIN S15

Chain BT

30S RIBOSOMAL PROTEIN S17