J3_4V8F_053

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_053 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1511

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V8F|1|BA|U|1073
4V8F|1|BA|G|1074
*
4V8F|1|BA|U|1083
4V8F|1|BA|G|1084
4V8F|1|BA|U|1085
4V8F|1|BA|U|1086
4V8F|1|BA|G|1087
*
4V8F|1|BA|C|1098
4V8F|1|BA|G|1099
4V8F|1|BA|C|1100
4V8F|1|BA|A|1101
4V8F|1|BA|A|1102

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BE

30S RIBOSOMAL PROTEIN S2

Chain BH

30S RIBOSOMAL PROTEIN S5