3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
4V8F|1|CA|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8F_056 not in the Motif Atlas
Geometric match to J3_5J7L_002
Geometric discrepancy: 0.1223
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

4V8F|1|CA|C|586
4V8F|1|CA|G|587
4V8F|1|CA|G|588
*
4V8F|1|CA|C|651
4V8F|1|CA|U|652
4V8F|1|CA|A|653
4V8F|1|CA|G|654
*
4V8F|1|CA|C|754
4V8F|1|CA|G|755

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CK
30S RIBOSOMAL PROTEIN S8
Chain CO
30S RIBOSOMAL PROTEIN S12
Chain CR
30S RIBOSOMAL PROTEIN S15
Chain CT
30S RIBOSOMAL PROTEIN S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.281 s