J3_4V8F_056
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 4V8F|1|CA|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8F_056 not in the Motif Atlas
- Geometric match to J3_5J7L_002
- Geometric discrepancy: 0.1223
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V8F|1|CA|C|586
4V8F|1|CA|G|587
4V8F|1|CA|G|588
*
4V8F|1|CA|C|651
4V8F|1|CA|U|652
4V8F|1|CA|A|653
4V8F|1|CA|G|654
*
4V8F|1|CA|C|754
4V8F|1|CA|G|755
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CK
- 30S RIBOSOMAL PROTEIN S8
- Chain CO
- 30S RIBOSOMAL PROTEIN S12
- Chain CR
- 30S RIBOSOMAL PROTEIN S15
- Chain CT
- 30S RIBOSOMAL PROTEIN S17
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