J3_4V8F_063

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V8F|1|DA|U|72, 4V8F|1|DA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_063 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.1355

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8F|1|DA|A|56
4V8F|1|DA|C|57
*
4V8F|1|DA|G|70
4V8F|1|DA|A|71
4V8F|1|DA|U|72
4V8F|1|DA|A|73
4V8F|1|DA|A|74
4V8F|1|DA|G|75
4V8F|1|DA|C|76
*
4V8F|1|DA|G|110
4V8F|1|DA|A|111
4V8F|1|DA|U|112
4V8F|1|DA|G|113
4V8F|1|DA|U|114

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23

Chain DW

50S ribosomal protein L29