J3_4V8N_002

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0932

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V8N|1|AA|C|936
4V8N|1|AA|A|937
4V8N|1|AA|A|938
4V8N|1|AA|G|939
*
4V8N|1|AA|C|1344
4V8N|1|AA|U|1345
4V8N|1|AA|A|1346
4V8N|1|AA|G|1347
4V8N|1|AA|U|1348
4V8N|1|AA|A|1349
4V8N|1|AA|A|1350
*
4V8N|1|AA|U|1372
4V8N|1|AA|G|1373
4V8N|1|AA|A|1374
4V8N|1|AA|A|1375
4V8N|1|AA|U|1376
4V8N|1|AA|A|1377
4V8N|1|AA|C|1378
4V8N|1|AA|G|1379

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AW

Transfer RNA; tRNA