J3_4V8N_007

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

4V8N|1|AA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AA|C|1116
4V8N|1|AA|G|1117
4V8N|1|AA|C|1118
*
4V8N|1|AA|G|1155
4V8N|1|AA|G|1156
4V8N|1|AA|A|1157
4V8N|1|AA|C|1158
4V8N|1|AA|U|1159
4V8N|1|AA|G|1160
4V8N|1|AA|C|1161
4V8N|1|AA|C|1162
*
4V8N|1|AA|G|1174
4V8N|1|AA|G|1175
4V8N|1|AA|A|1176
4V8N|1|AA|G|1177
4V8N|1|AA|G|1178
4V8N|1|AA|A|1179
4V8N|1|AA|A|1180
4V8N|1|AA|G|1181
4V8N|1|AA|G|1182
4V8N|1|AA|A|1183
4V8N|1|AA|G|1184

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AJ

30S RIBOSOMAL PROTEIN S10

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CJ

30S RIBOSOMAL PROTEIN S10