J3_4V8N_035

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGAG*CAUGUG*CAAAGGGCUUUGCCCGCUUC

Length

32 nucleotides

Bulged bases

4V8N|1|AA|A|197, 4V8N|1|AA|U|202, 4V8N|1|AA|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AA|G|139
4V8N|1|AA|A|140
4V8N|1|AA|A|141
4V8N|1|AA|G|142
4V8N|1|AA|A|143
4V8N|1|AA|G|144
*
4V8N|1|AA|C|178
4V8N|1|AA|A|179
4V8N|1|AA|U|180
4V8N|1|AA|G|181
4V8N|1|AA|U|182
4V8N|1|AA|G|183
*
4V8N|1|AA|C|194
4V8N|1|AA|A|195
4V8N|1|AA|A|196
4V8N|1|AA|A|197
4V8N|1|AA|G|198
4V8N|1|AA|G|199
4V8N|1|AA|G|200
4V8N|1|AA|C|201
4V8N|1|AA|U|202
4V8N|1|AA|U|203
4V8N|1|AA|U|204
4V8N|1|AA|G|216
4V8N|1|AA|C|217
4V8N|1|AA|C|218
4V8N|1|AA|C|219
4V8N|1|AA|G|220
4V8N|1|AA|C|221
4V8N|1|AA|U|222
4V8N|1|AA|U|223
4V8N|1|AA|C|224

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20