J3_4V8N_043

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGC*GUGUUG*CGCAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|AA|U|1073
4V8N|1|AA|G|1074
4V8N|1|AA|C|1075
*
4V8N|1|AA|G|1082
4V8N|1|AA|U|1083
4V8N|1|AA|G|1084
4V8N|1|AA|U|1085
4V8N|1|AA|U|1086
4V8N|1|AA|G|1087
*
4V8N|1|AA|C|1098
4V8N|1|AA|G|1099
4V8N|1|AA|C|1100
4V8N|1|AA|A|1101
4V8N|1|AA|A|1102

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AE

30S RIBOSOMAL PROTEIN S5