J3_4V8N_044
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCCUUAGCUUAGUCUGGUUAAAGCGA*UUGGGCGCU*GGCAGGGCC
- Length
- 45 nucleotides
- Bulged bases
- 4V8N|1|AW|U|16, 4V8N|1|AW|C|17, 4V8N|1|AW|U|18, 4V8N|1|AW|G|19, 4V8N|1|AW|G|20, 4V8N|1|AW|U|21, 4V8N|1|AW|U|22, 4V8N|1|AW|G|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8N|1|AW|G|3
4V8N|1|AW|C|4
4V8N|1|AW|C|5
4V8N|1|AW|C|6
4V8N|1|AW|U|7
4V8N|1|AW|U|8
4V8N|1|AW|A|9
4V8N|1|AW|G|10
4V8N|1|AW|C|11
4V8N|1|AW|U|12
4V8N|1|AW|U|13
4V8N|1|AW|A|14
4V8N|1|AW|G|15
4V8N|1|AW|U|16
4V8N|1|AW|C|17
4V8N|1|AW|U|18
4V8N|1|AW|G|19
4V8N|1|AW|G|20
4V8N|1|AW|U|21
4V8N|1|AW|U|22
4V8N|1|AW|A|23
4V8N|1|AW|A|24
4V8N|1|AW|A|25
4V8N|1|AW|G|26
4V8N|1|AW|C|27
4V8N|1|AW|G|28
4V8N|1|AW|A|29
*
4V8N|1|AW|U|45
4V8N|1|AW|U|46
4V8N|1|AW|G|47
4V8N|1|AW|G|48
4V8N|1|AW|G|49
4V8N|1|AW|C|50
4V8N|1|AW|G|51
4V8N|1|AW|C|52
4V8N|1|AW|U|53
*
4V8N|1|AW|G|65
4V8N|1|AW|G|66
4V8N|1|AW|C|67
4V8N|1|AW|A|68
4V8N|1|AW|G|69
4V8N|1|AW|G|70
4V8N|1|AW|G|71
4V8N|1|AW|C|72
4V8N|1|AW|C|73
Current chains
- Chain AW
- A-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain B1
- 50S RIBOSOMAL PROTEIN L28
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: