J3_4V8N_056

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_056 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.0867

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8N|1|CA|G|46
4V8N|1|CA|C|47
*
4V8N|1|CA|G|361
4V8N|1|CA|G|362
4V8N|1|CA|A|363
4V8N|1|CA|A|364
4V8N|1|CA|U|365
4V8N|1|CA|C|366
4V8N|1|CA|U|367
*
4V8N|1|CA|A|393
4V8N|1|CA|G|394
4V8N|1|CA|C|395

Current chains

Chain CA

16S RRNA

Nearby chains

Chain BI

50S RIBOSOMAL PROTEIN L9

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CP

30S RIBOSOMAL PROTEIN S16