J3_4V8N_061

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGAAU*GGAACGCCGAUGG*CAG

Length

22 nucleotides

Bulged bases

4V8N|1|CA|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|U|672
4V8N|1|CA|G|673
4V8N|1|CA|G|674
4V8N|1|CA|A|675
4V8N|1|CA|A|676
4V8N|1|CA|U|677
*
4V8N|1|CA|G|713
4V8N|1|CA|G|714
4V8N|1|CA|A|715
4V8N|1|CA|A|716
4V8N|1|CA|C|717
4V8N|1|CA|G|718
4V8N|1|CA|C|719
4V8N|1|CA|C|720
4V8N|1|CA|G|721
4V8N|1|CA|A|722
4V8N|1|CA|U|723
4V8N|1|CA|G|724
4V8N|1|CA|G|725
*
4V8N|1|CA|C|732
4V8N|1|CA|A|733
4V8N|1|CA|G|734

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CF

30S RIBOSOMAL PROTEIN S6

Chain CK

30S RIBOSOMAL PROTEIN S11

Chain CO

30S RIBOSOMAL PROTEIN S15

Chain CR

30S RIBOSOMAL PROTEIN S18

Chain DD

50S RIBOSOMAL PROTEIN L2