J3_4V8N_062

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAAUC*GGUGAAUACG

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|C|936
4V8N|1|CA|A|937
4V8N|1|CA|A|938
4V8N|1|CA|G|939
*
4V8N|1|CA|C|1344
4V8N|1|CA|U|1345
4V8N|1|CA|A|1346
4V8N|1|CA|G|1347
4V8N|1|CA|U|1348
4V8N|1|CA|A|1349
4V8N|1|CA|A|1350
4V8N|1|CA|U|1351
4V8N|1|CA|C|1352
*
4V8N|1|CA|G|1370
4V8N|1|CA|G|1371
4V8N|1|CA|U|1372
4V8N|1|CA|G|1373
4V8N|1|CA|A|1374
4V8N|1|CA|A|1375
4V8N|1|CA|U|1376
4V8N|1|CA|A|1377
4V8N|1|CA|C|1378
4V8N|1|CA|G|1379

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S7

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CU

30S RIBOSOMAL PROTEIN THX

Chain CW

Transfer RNA; tRNA