J3_4V8N_065

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAUGCU*AGCACAG*CUUACG

Length

24 nucleotides

Bulged bases

4V8N|1|CA|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|CA|C|990
4V8N|1|CA|U|991
4V8N|1|CA|U|992
4V8N|1|CA|G|993
4V8N|1|CA|A|994
4V8N|1|CA|C|995
4V8N|1|CA|A|996
4V8N|1|CA|U|997
4V8N|1|CA|G|998
4V8N|1|CA|C|999
4V8N|1|CA|U|1000
*
4V8N|1|CA|A|1041
4V8N|1|CA|G|1042
4V8N|1|CA|C|1043
4V8N|1|CA|A|1044
4V8N|1|CA|C|1045
4V8N|1|CA|A|1046
4V8N|1|CA|G|1047
*
4V8N|1|CA|C|1210
4V8N|1|CA|U|1211
4V8N|1|CA|U|1212
4V8N|1|CA|A|1213
4V8N|1|CA|C|1214
4V8N|1|CA|G|1215

Current chains

Chain CA

16S RRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z