Loop J3_4V8N

3D structure

PDB id: 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: GCCCUUAGCUUAGUCUGGUUAAAGCGA*UUGGGCGCU*GGCAGGGCC
Length: 45 nucleotides
Bulged bases: 4V8N|1|CW|U|16, 4V8N|1|CW|C|17, 4V8N|1|CW|U|18, 4V8N|1|CW|G|19, 4V8N|1|CW|G|20, 4V8N|1|CW|U|21, 4V8N|1|CW|U|22, 4V8N|1|CW|G|49
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8N|1|CW|G|3
4V8N|1|CW|C|4
4V8N|1|CW|C|5
4V8N|1|CW|C|6
4V8N|1|CW|U|7
4V8N|1|CW|U|8
4V8N|1|CW|A|9
4V8N|1|CW|G|10
4V8N|1|CW|C|11
4V8N|1|CW|U|12
4V8N|1|CW|U|13
4V8N|1|CW|A|14
4V8N|1|CW|G|15
4V8N|1|CW|U|16
4V8N|1|CW|C|17
4V8N|1|CW|U|18
4V8N|1|CW|G|19
4V8N|1|CW|G|20
4V8N|1|CW|U|21
4V8N|1|CW|U|22
4V8N|1|CW|A|23
4V8N|1|CW|A|24
4V8N|1|CW|A|25
4V8N|1|CW|G|26
4V8N|1|CW|C|27
4V8N|1|CW|G|28
4V8N|1|CW|A|29
*
4V8N|1|CW|U|45
4V8N|1|CW|U|46
4V8N|1|CW|G|47
4V8N|1|CW|G|48
4V8N|1|CW|G|49
4V8N|1|CW|C|50
4V8N|1|CW|G|51
4V8N|1|CW|C|52
4V8N|1|CW|U|53
*
4V8N|1|CW|G|65
4V8N|1|CW|G|66
4V8N|1|CW|C|67
4V8N|1|CW|A|68
4V8N|1|CW|G|69
4V8N|1|CW|G|70
4V8N|1|CW|G|71
4V8N|1|CW|C|72
4V8N|1|CW|C|73

Current chains

Chain CW: A-SITE TRNA ILE2 AGMATIDINE

Nearby chains

Chain CG: 30S RIBOSOMAL PROTEIN S7
Chain CK: 30S RIBOSOMAL PROTEIN S11
Chain D1: 50S RIBOSOMAL PROTEIN L28
Chain D6: 50S RIBOSOMAL PROTEIN L33
Chain DA: Large subunit ribosomal RNA; LSU rRNA
Chain DC: 50S RIBOSOMAL PROTEIN L1

J3_4V8N_067