J3_4V8N_080
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUCGUCAG*CGCAACC*GACGACGUCUG
- Length
- 27 nucleotides
- Bulged bases
- 4V8N|1|AA|G|1190, 4V8N|1|AA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8N|1|AA|C|1060
4V8N|1|AA|G|1061
4V8N|1|AA|U|1062
4V8N|1|AA|C|1063
4V8N|1|AA|G|1064
4V8N|1|AA|U|1065
4V8N|1|AA|C|1066
4V8N|1|AA|A|1067
4V8N|1|AA|G|1068
*
4V8N|1|AA|C|1107
4V8N|1|AA|G|1108
4V8N|1|AA|C|1109
4V8N|1|AA|A|1110
4V8N|1|AA|A|1111
4V8N|1|AA|C|1112
4V8N|1|AA|C|1113
*
4V8N|1|AA|G|1187
4V8N|1|AA|A|1188
4V8N|1|AA|C|1189
4V8N|1|AA|G|1190
4V8N|1|AA|A|1191
4V8N|1|AA|C|1192
4V8N|1|AA|G|1193
4V8N|1|AA|U|1194
4V8N|1|AA|C|1195
4V8N|1|AA|U|1196
4V8N|1|AA|G|1197
Current chains
- Chain AA
- 16S RRNA
Nearby chains
- Chain AB
- 30S RIBOSOMAL PROTEIN S2
- Chain AC
- 30S RIBOSOMAL PROTEIN S3
- Chain AE
- 30S RIBOSOMAL PROTEIN S5
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AJ
- 30S RIBOSOMAL PROTEIN S10
- Chain AN
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain AX
- MRNA
- Chain AY
- Transfer RNA; tRNA
Coloring options: