3D structure

PDB id
4V8N (explore in PDB, NAKB, or RNA 3D Hub)
Description
The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUCGUCAG*CGCAACC*GACGACGUCUG
Length
27 nucleotides
Bulged bases
4V8N|1|AA|G|1190, 4V8N|1|AA|U|1196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8N|1|AA|C|1060
4V8N|1|AA|G|1061
4V8N|1|AA|U|1062
4V8N|1|AA|C|1063
4V8N|1|AA|G|1064
4V8N|1|AA|U|1065
4V8N|1|AA|C|1066
4V8N|1|AA|A|1067
4V8N|1|AA|G|1068
*
4V8N|1|AA|C|1107
4V8N|1|AA|G|1108
4V8N|1|AA|C|1109
4V8N|1|AA|A|1110
4V8N|1|AA|A|1111
4V8N|1|AA|C|1112
4V8N|1|AA|C|1113
*
4V8N|1|AA|G|1187
4V8N|1|AA|A|1188
4V8N|1|AA|C|1189
4V8N|1|AA|G|1190
4V8N|1|AA|A|1191
4V8N|1|AA|C|1192
4V8N|1|AA|G|1193
4V8N|1|AA|U|1194
4V8N|1|AA|C|1195
4V8N|1|AA|U|1196
4V8N|1|AA|G|1197

Current chains

Chain AA
16S RRNA

Nearby chains

Chain AB
30S RIBOSOMAL PROTEIN S2
Chain AC
30S RIBOSOMAL PROTEIN S3
Chain AE
30S RIBOSOMAL PROTEIN S5
Chain AG
30S RIBOSOMAL PROTEIN S7
Chain AI
30S RIBOSOMAL PROTEIN S9
Chain AJ
30S RIBOSOMAL PROTEIN S10
Chain AN
30S RIBOSOMAL PROTEIN S14 TYPE Z
Chain AX
MRNA
Chain AY
Transfer RNA; tRNA

Coloring options:

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