J3_4V8O_021

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUAG*CGAAGC*GCGUUAAG

Length

18 nucleotides

Bulged bases

4V8O|1|AA|U|871, 4V8O|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8O|1|AA|C|826
4V8O|1|AA|U|827
4V8O|1|AA|A|828
4V8O|1|AA|G|829
*
4V8O|1|AA|C|857
4V8O|1|AA|G|858
4V8O|1|AA|A|859
4V8O|1|AA|A|860
4V8O|1|AA|G|861
4V8O|1|AA|C|862
*
4V8O|1|AA|G|867
4V8O|1|AA|C|868
4V8O|1|AA|G|869
4V8O|1|AA|U|870
4V8O|1|AA|U|871
4V8O|1|AA|A|872
4V8O|1|AA|A|873
4V8O|1|AA|G|874

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AE

30S RIBOSOMAL PROTEIN S5

Chain AH

30S RIBOSOMAL PROTEIN S8