J3_4V8Q_010

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_010 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0666

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V8Q|1|BA|C|936
4V8Q|1|BA|A|937
4V8Q|1|BA|A|938
4V8Q|1|BA|G|939
*
4V8Q|1|BA|C|1344
4V8Q|1|BA|U|1345
4V8Q|1|BA|A|1346
4V8Q|1|BA|G|1347
4V8Q|1|BA|U|1348
4V8Q|1|BA|A|1349
4V8Q|1|BA|A|1350
*
4V8Q|1|BA|U|1372
4V8Q|1|BA|G|1373
4V8Q|1|BA|A|1374
4V8Q|1|BA|A|1375
4V8Q|1|BA|U|1376
4V8Q|1|BA|A|1377
4V8Q|1|BA|C|1378
4V8Q|1|BA|G|1379

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S7

Chain BI

30S RIBOSOMAL PROTEIN S9

Chain BW

Transfer RNA; tRNA