J3_4V8Q_012
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4V8Q|1|BA|A|975, 4V8Q|1|BA|G|976, 4V8Q|1|BA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_012 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0769
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|U|955
4V8Q|1|BA|U|956
4V8Q|1|BA|U|957
4V8Q|1|BA|A|958
4V8Q|1|BA|A|959
4V8Q|1|BA|U|960
4V8Q|1|BA|U|961
4V8Q|1|BA|C|962
*
4V8Q|1|BA|G|973
4V8Q|1|BA|A|974
4V8Q|1|BA|A|975
4V8Q|1|BA|G|976
4V8Q|1|BA|A|977
4V8Q|1|BA|A|978
4V8Q|1|BA|C|979
4V8Q|1|BA|C|980
4V8Q|1|BA|U|981
4V8Q|1|BA|U|982
4V8Q|1|BA|A|983
4V8Q|1|BA|C|984
*
4V8Q|1|BA|G|1221
4V8Q|1|BA|G|1222
4V8Q|1|BA|C|1223
4V8Q|1|BA|G|1224
4V8Q|1|BA|A|1225
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BJ
- 30S RIBOSOMAL PROTEIN S10
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BN
- 30S RIBOSOMAL PROTEIN S14
- Chain BS
- 30S RIBOSOMAL PROTEIN S19
Coloring options: