J3_4V8Q_024
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V8Q|1|AA|U|2390, 4V8Q|1|AA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_024 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1062
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Q|1|AA|G|2282
4V8Q|1|AA|C|2283
4V8Q|1|AA|C|2284
*
4V8Q|1|AA|G|2384
4V8Q|1|AA|C|2385
4V8Q|1|AA|C|2386
4V8Q|1|AA|U|2387
4V8Q|1|AA|A|2388
4V8Q|1|AA|G|2389
4V8Q|1|AA|U|2390
4V8Q|1|AA|G|2391
4V8Q|1|AA|A|2392
4V8Q|1|AA|A|2393
4V8Q|1|AA|C|2394
4V8Q|1|AA|C|2395
*
4V8Q|1|AA|G|2421
4V8Q|1|AA|A|2422
4V8Q|1|AA|U|2423
4V8Q|1|AA|C|2424
4V8Q|1|AA|A|2425
4V8Q|1|AA|A|2426
4V8Q|1|AA|C|2427
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S RIBOSOMAL PROTEIN L27
- Chain A1
- 50S RIBOSOMAL PROTEIN L28
- Chain A6
- 50S RIBOSOMAL PROTEIN L33
- Chain A8
- 50S RIBOSOMAL PROTEIN L35
- Chain AP
- 50S RIBOSOMAL PROTEIN L15
- Chain BW
- Transfer RNA; tRNA
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