J3_4V8Q_035

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUGC*GCCCAGUUC*GCCG

Length

19 nucleotides

Bulged bases

4V8Q|1|BA|U|1240, 4V8Q|1|BA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|BA|C|1237
4V8Q|1|BA|A|1238
4V8Q|1|BA|A|1239
4V8Q|1|BA|U|1240
4V8Q|1|BA|G|1241
4V8Q|1|BA|C|1242
*
4V8Q|1|BA|G|1295
4V8Q|1|BA|C|1296
4V8Q|1|BA|C|1297
4V8Q|1|BA|C|1298
4V8Q|1|BA|A|1299
4V8Q|1|BA|G|1300
4V8Q|1|BA|U|1301
4V8Q|1|BA|U|1302
4V8Q|1|BA|C|1303
*
4V8Q|1|BA|G|1334
4V8Q|1|BA|C|1335
4V8Q|1|BA|C|1336
4V8Q|1|BA|G|1337

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S7

Chain BM

30S RIBOSOMAL PROTEIN S13

Chain BU

30S RIBOSOMAL PROTEIN THX

Chain BW

Transfer RNA; tRNA