J3_4V8Q_038
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAGCG*CAGCG*UCG
- Length
- 16 nucleotides
- Bulged bases
- 4V8Q|1|AB|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Q|1|AB|C|11
4V8Q|1|AB|C|12
4V8Q|1|AB|A|13
4V8Q|1|AB|U|14
4V8Q|1|AB|A|15
4V8Q|1|AB|G|16
4V8Q|1|AB|C|17
4V8Q|1|AB|G|18
*
4V8Q|1|AB|C|65
4V8Q|1|AB|A|66
4V8Q|1|AB|G|67
4V8Q|1|AB|C|68
4V8Q|1|AB|G|69
*
4V8Q|1|AB|U|108
4V8Q|1|AB|C|109
4V8Q|1|AB|G|110
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A0
- 50S RIBOSOMAL PROTEIN L27
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS
- 50S RIBOSOMAL PROTEIN L18
- Chain AZ
- 50S RIBOSOMAL PROTEIN L25
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