J3_4V8U_025

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V8U|1|DA|G|686, 4V8U|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8U_025 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1185

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

4V8U|1|DA|C|683
4V8U|1|DA|G|684
4V8U|1|DA|A|685
4V8U|1|DA|G|686
4V8U|1|DA|C|687
4V8U|1|DA|U|688
4V8U|1|DA|A|689
*
4V8U|1|DA|U|773
4V8U|1|DA|A|774
4V8U|1|DA|G|775
*
4V8U|1|DA|C|791
4V8U|1|DA|G|792
4V8U|1|DA|A|793
4V8U|1|DA|G|794

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2