Loop J3_4V8X

3D structure

PDB id: 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of Thermus thermophilus ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.35 Å

Loop

Sequence: CGGGGUGGAGCAGCCUGGUAGCUCGU*AAGGUCGUCGG*CCGGCCCCCG
Length: 47 nucleotides
Bulged bases: 4V8X|1|AW|C|16, 4V8X|1|AW|G|18, 4V8X|1|AW|G|19, 4V8X|1|AW|U|20, 4V8X|1|AW|U|47
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8X|1|AW|C|3
4V8X|1|AW|G|4
4V8X|1|AW|G|5
4V8X|1|AW|G|6
4V8X|1|AW|G|7
4V8X|1|AW|U|8
4V8X|1|AW|G|9
4V8X|1|AW|G|10
4V8X|1|AW|A|11
4V8X|1|AW|G|12
4V8X|1|AW|C|13
4V8X|1|AW|A|14
4V8X|1|AW|G|15
4V8X|1|AW|C|16
4V8X|1|AW|C|17
4V8X|1|AW|U|17|||A
4V8X|1|AW|G|18
4V8X|1|AW|G|19
4V8X|1|AW|U|20
4V8X|1|AW|A|21
4V8X|1|AW|G|22
4V8X|1|AW|C|23
4V8X|1|AW|U|24
4V8X|1|AW|C|25
4V8X|1|AW|G|26
4V8X|1|AW|U|27
*
4V8X|1|AW|A|43
4V8X|1|AW|A|44
4V8X|1|AW|G|45
4V8X|1|AW|G|46
4V8X|1|AW|U|47
4V8X|1|AW|C|48
4V8X|1|AW|G|49
4V8X|1|AW|U|50
4V8X|1|AW|C|51
4V8X|1|AW|G|52
4V8X|1|AW|G|53
*
4V8X|1|AW|C|61
4V8X|1|AW|C|62
4V8X|1|AW|G|63
4V8X|1|AW|G|64
4V8X|1|AW|C|65
4V8X|1|AW|C|66
4V8X|1|AW|C|67
4V8X|1|AW|C|68
4V8X|1|AW|C|69
4V8X|1|AW|G|70

Current chains

Chain AW: transfer RNA

Nearby chains

Chain AG: 30S RIBOSOMAL PROTEIN S7
Chain AK: 30S RIBOSOMAL PROTEIN S11
Chain B6: 50S RIBOSOMAL PROTEIN L33
Chain BA: Large subunit ribosomal RNA; LSU rRNA
Chain BC: 50S RIBOSOMAL PROTEIN L1

J3_4V8X_038