J3_4V8X_056

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCUUGACAUGCUAGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCUAGCACAG*CUUACGG

Length

61 nucleotides

Bulged bases

4V8X|1|CA|A|1005, 4V8X|1|CA|U|1025, 4V8X|1|CA|G|1026, 4V8X|1|CA|C|1029, 4V8X|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|CA|C|989
4V8X|1|CA|C|990
4V8X|1|CA|U|991
4V8X|1|CA|U|992
4V8X|1|CA|G|993
4V8X|1|CA|A|994
4V8X|1|CA|C|995
4V8X|1|CA|A|996
4V8X|1|CA|U|997
4V8X|1|CA|G|998
4V8X|1|CA|C|999
4V8X|1|CA|U|1000
4V8X|1|CA|A|1001
4V8X|1|CA|G|1001|||A
4V8X|1|CA|G|1002
4V8X|1|CA|G|1003
4V8X|1|CA|A|1004
4V8X|1|CA|A|1005
4V8X|1|CA|C|1006
4V8X|1|CA|C|1007
4V8X|1|CA|C|1008
4V8X|1|CA|G|1009
*
4V8X|1|CA|U|1020
4V8X|1|CA|G|1021
4V8X|1|CA|G|1022
4V8X|1|CA|G|1023
4V8X|1|CA|G|1024
4V8X|1|CA|U|1025
4V8X|1|CA|G|1026
4V8X|1|CA|C|1027
4V8X|1|CA|C|1028
4V8X|1|CA|C|1029
4V8X|1|CA|C|1030
4V8X|1|CA|G|1030|||A
4V8X|1|CA|C|1030|||B
4V8X|1|CA|G|1030|||C
4V8X|1|CA|A|1030|||D
4V8X|1|CA|G|1031
4V8X|1|CA|G|1032
4V8X|1|CA|G|1033
4V8X|1|CA|G|1034
4V8X|1|CA|A|1035
4V8X|1|CA|G|1036
4V8X|1|CA|C|1037
4V8X|1|CA|C|1038
4V8X|1|CA|C|1039
4V8X|1|CA|U|1040
4V8X|1|CA|A|1041
4V8X|1|CA|G|1042
4V8X|1|CA|C|1043
4V8X|1|CA|A|1044
4V8X|1|CA|C|1045
4V8X|1|CA|A|1046
4V8X|1|CA|G|1047
*
4V8X|1|CA|C|1210
4V8X|1|CA|U|1211
4V8X|1|CA|U|1212
4V8X|1|CA|A|1213
4V8X|1|CA|C|1214
4V8X|1|CA|G|1215
4V8X|1|CA|G|1216

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CY

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM

Chain CZ

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM