J3_4V8Y_001

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_001 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.0921

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8Y|1|B2|A|760
4V8Y|1|B2|G|761
4V8Y|1|B2|A|762
4V8Y|1|B2|G|763
*
4V8Y|1|B2|C|773
4V8Y|1|B2|A|774
4V8Y|1|B2|G|775
*
4V8Y|1|B2|U|785
4V8Y|1|B2|C|786
4V8Y|1|B2|G|787
4V8Y|1|B2|A|788
4V8Y|1|B2|A|789
4V8Y|1|B2|U|790

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A