J3_4V8Y_002
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V8Y|1|B2|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_002 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0741
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V8Y|1|B2|A|881
4V8Y|1|B2|U|882
4V8Y|1|B2|C|883
4V8Y|1|B2|A|884
*
4V8Y|1|B2|U|928
4V8Y|1|B2|A|929
4V8Y|1|B2|A|930
4V8Y|1|B2|C|931
4V8Y|1|B2|U|932
4V8Y|1|B2|A|933
4V8Y|1|B2|C|934
4V8Y|1|B2|U|935
4V8Y|1|B2|G|936
*
4V8Y|1|B2|C|943
4V8Y|1|B2|A|944
4V8Y|1|B2|U|945
4V8Y|1|B2|U|946
4V8Y|1|B2|U|947
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A0
- 40S RIBOSOMAL PROTEIN S26-A
- Chain AB
- 40S RIBOSOMAL PROTEIN S1-A
- Chain AN
- 40S RIBOSOMAL PROTEIN S13
- Chain AO
- 40S RIBOSOMAL PROTEIN S14-A
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