J3_4V8Y_020

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_020 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1471

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V8Y|1|B5|C|3298
4V8Y|1|B5|A|3299
4V8Y|1|B5|U|3300
*
4V8Y|1|B5|A|3314
4V8Y|1|B5|G|3315
4V8Y|1|B5|A|3316
4V8Y|1|B5|U|3317
4V8Y|1|B5|G|3318
*
4V8Y|1|B5|C|3388
4V8Y|1|B5|U|3389
4V8Y|1|B5|G|3390

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17-A

Chain Bd

60S RIBOSOMAL PROTEIN L31-A