J3_4V8Y_023

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4V8Y|1|B2|A|217, 4V8Y|1|B2|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B2|A|213
4V8Y|1|B2|G|214
4V8Y|1|B2|A|215
4V8Y|1|B2|U|216
4V8Y|1|B2|A|217
4V8Y|1|B2|A|218
4V8Y|1|B2|A|219
4V8Y|1|B2|A|220
4V8Y|1|B2|A|221
4V8Y|1|B2|A|222
4V8Y|1|B2|U|223
4V8Y|1|B2|C|224
4V8Y|1|B2|A|225
4V8Y|1|B2|A|226
4V8Y|1|B2|U|227
4V8Y|1|B2|G|228
*
4V8Y|1|B2|C|237
4V8Y|1|B2|U|238
4V8Y|1|B2|C|239
4V8Y|1|B2|U|240
4V8Y|1|B2|U|241
4V8Y|1|B2|U|242
4V8Y|1|B2|G|243
*
4V8Y|1|B2|C|250
4V8Y|1|B2|A|251
4V8Y|1|B2|U|252

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain AL

40S RIBOSOMAL PROTEIN S11-A