J3_4V8Y_027
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V8Y|1|B2|U|1390, 4V8Y|1|B2|U|1413, 4V8Y|1|B2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_027 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.1039
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B2|A|1336
4V8Y|1|B2|A|1337
4V8Y|1|B2|C|1338
*
4V8Y|1|B2|G|1386
4V8Y|1|B2|G|1387
4V8Y|1|B2|A|1388
4V8Y|1|B2|C|1389
4V8Y|1|B2|U|1390
4V8Y|1|B2|A|1391
*
4V8Y|1|B2|U|1407
4V8Y|1|B2|G|1408
4V8Y|1|B2|G|1409
4V8Y|1|B2|A|1410
4V8Y|1|B2|A|1411
4V8Y|1|B2|G|1412
4V8Y|1|B2|U|1413
4V8Y|1|B2|U|1414
4V8Y|1|B2|U|1415
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain A6
- GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN
- Chain AF
- 40S RIBOSOMAL PROTEIN S5
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AR
- 40S RIBOSOMAL PROTEIN S17-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
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