J3_4V8Y_028
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 4V8Y|1|B5|U|117, 4V8Y|1|B5|G|120, 4V8Y|1|B5|A|121, 4V8Y|1|B5|U|147, 4V8Y|1|B5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Y|1|B5|C|113
4V8Y|1|B5|A|114
4V8Y|1|B5|A|115
4V8Y|1|B5|A|116
4V8Y|1|B5|U|117
4V8Y|1|B5|U|118
4V8Y|1|B5|U|119
4V8Y|1|B5|G|120
4V8Y|1|B5|A|121
4V8Y|1|B5|A|122
4V8Y|1|B5|A|123
4V8Y|1|B5|U|124
*
4V8Y|1|B5|A|144
4V8Y|1|B5|G|145
4V8Y|1|B5|U|146
4V8Y|1|B5|U|147
4V8Y|1|B5|G|148
4V8Y|1|B5|U|149
4V8Y|1|B5|A|150
4V8Y|1|B5|A|151
4V8Y|1|B5|U|152
4V8Y|1|B5|U|153
4V8Y|1|B5|U|154
4V8Y|1|B5|G|155
4V8Y|1|B5|G|156
4V8Y|1|B5|A|157
4V8Y|1|B5|G|158
*
4V8Y|1|B5|C|263
4V8Y|1|B5|G|264
4V8Y|1|B5|A|265
4V8Y|1|B5|A|266
4V8Y|1|B5|G|267
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BG
- 60S RIBOSOMAL PROTEIN L8-A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36-A
Coloring options: