J3_4V8Y_036
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 4V8Y|1|B5|C|1556, 4V8Y|1|B5|A|1558, 4V8Y|1|B5|C|1581
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Y|1|B5|A|1537
4V8Y|1|B5|G|1538
4V8Y|1|B5|A|1539
4V8Y|1|B5|U|1540
4V8Y|1|B5|G|1541
4V8Y|1|B5|G|1542
*
4V8Y|1|B5|C|1551
4V8Y|1|B5|G|1552
4V8Y|1|B5|U|1553
4V8Y|1|B5|U|1554
4V8Y|1|B5|U|1555
4V8Y|1|B5|C|1556
4V8Y|1|B5|A|1557
4V8Y|1|B5|A|1558
4V8Y|1|B5|A|1559
4V8Y|1|B5|G|1560
*
4V8Y|1|B5|C|1579
4V8Y|1|B5|A|1580
4V8Y|1|B5|C|1581
4V8Y|1|B5|C|1582
4V8Y|1|B5|A|1583
4V8Y|1|B5|U|1584
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain BG
- 60S RIBOSOMAL PROTEIN L8-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
Coloring options: